Yu Zhu
Yu Zhu
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Protein
Science | Computed structures of core eukaryotic protein complexes
Artificial intelligence (AI) and co-evolution together for predicting eukaryotic interacting proteins
Yu Zhu
Last updated on Nov 15, 2021
5 min read
Protein
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Protein Structure
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Protein-protein Interaction (PPI)
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Evolution
,
Science Publications
Bridging Sequence and Structure with Evol
Personal Evol Workshop Notes
Yu Zhu
Last updated on Aug 9, 2021
1 min read
Protein
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Elastic network model
,
co-evolution
PDF
Collective Dynamics of Proteins Using Elastic Network Models
Personal ProDy Workshop Notes
Yu Zhu
Last updated on Aug 9, 2021
1 min read
Protein
,
Elastic network model
PDF
Breakthroughs in Recent Protein Structure Prediction
Personal interpretations of this phenomenon
Yu Zhu
Last updated on Jul 25, 2021
3 min read
Bioinformatics
,
Protein
,
Protein Structure
Nature Communications | CopulaNet - Learning residue co-evolution directly from multiple sequence alignment for protein structure prediction
An end-to-end deep neural network framework called CopulaNet for estimating the distance between residues
Yu Zhu
Last updated on May 11, 2021
4 min read
Protein
,
co-evolution
,
Protein Structure
,
Machine Learning
Science | Interactions between nascent proteins translated by adjacent ribosomes drive homomer assembly
The Secret of Protein Assembly
Yu Zhu
Last updated on Jan 11, 2021
4 min read
Protein
,
Proteomics
,
Science Publications
Journal of Chemical Information and Modeling | Comparative Dynamics and Functional Mechanisms of the CYP17A1 Tunnels Regulated by Ligand Binding
An integrated calculation strategy to systematically study the mechanism of ligand binding and channel tunneling dynamics at the atomic level
Yu Zhu
Last updated on Oct 3, 2020
6 min read
Protein
,
Elastic network model
,
Ligand
,
Biological Network
Paralogs and Orthologs
Definitions of Paralogs and Orthologs
Yu Zhu
Last updated on Jan 27, 2020
6 min read
Bioinformatics
,
Evolution
,
Protein
ProDy - Elastic Network Model
The anisotropic network model (ANM) and the Gaussian network model (GNM) are two kinds of elastic network models (ENMs) for performing normal mode analysis on low-frequency modes of proteins and their complexes.
Yu Zhu
Last updated on May 7, 2021
6 min read
Protein
,
Biological Network
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