Biological Network

Chemical Science | wSDTNBI - a novel network-based inference method for virtual screening
Important progress in the research of network-based virtual screening methods
Yu Zhu
Last updated on Dec 29, 2021 5 min read Bioinformatics, Virtual Screening, Biological Network, Network Pharmacology
Chemical Science | wSDTNBI - a novel network-based inference method for virtual screening
Nature Communications | Network medicine for disease module identification and drug repurposing with the NeDRex platform
NeDRex, an integrated web-based interactive platform for drug repurposing and disease module discovery
Yu Zhu
Last updated on Dec 19, 2021 2 min read Bioinformatics, Biological Network, Network Pharmacology, Drug Repurposing
Nature Communications | Network medicine for disease module identification and drug repurposing with the NeDRex platform
Theory in Biosciences | Biology, geometry and information
How does life survive in a complex environment? The interweaving of information, regulation and geometry
Yu Zhu
Last updated on Nov 7, 2021 1 min read Information, Bioinformatics, Evolution, Biological Network
Theory in Biosciences | Biology, geometry and information
Journal of Chemical Information and Modeling | Comparative Dynamics and Functional Mechanisms of the CYP17A1 Tunnels Regulated by Ligand Binding
An integrated calculation strategy to systematically study the mechanism of ligand binding and channel tunneling dynamics at the atomic level
Yu Zhu
Last updated on Oct 3, 2020 6 min read Protein, Elastic network model, Ligand, Biological Network
Journal of Chemical Information and Modeling | Comparative Dynamics and Functional Mechanisms of the CYP17A1 Tunnels Regulated by Ligand Binding
ProDy - Elastic Network Model
The anisotropic network model (ANM) and the Gaussian network model (GNM) are two kinds of elastic network models (ENMs) for performing normal mode analysis on low-frequency modes of proteins and their complexes.
Yu Zhu
Last updated on May 7, 2021 6 min read Protein, Biological Network
ProDy - Elastic Network Model